Fix imports per latest API changes in PyKale #34
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Pull Request Overview
This PR updates import paths and API references to match the latest PyKale library restructuring, specifically for the multiomics cancer classification tutorial. The changes ensure compatibility with recent PyKale API changes while maintaining the tutorial's functionality.
Key Changes:
- Updated import path for
MogonetGCNfromkale.embed.mogonettokale.embed.model_lib.mogonet - Refreshed notebook execution outputs to reflect current library behavior
- Updated kernel and environment metadata in the Jupyter notebook
Reviewed Changes
Copilot reviewed 2 out of 4 changed files in this pull request and generated 1 comment.
| File | Description |
|---|---|
| tutorials/multiomics-cancer-classification/model.py | Updates import path for MogonetGCN to follow new API structure |
| tutorials/multiomics-cancer-classification/tutorial-cancer.ipynb | Refreshes notebook execution state with updated outputs and metadata |
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| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "execution_count": 7, |
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shuo-zhou
approved these changes
Sep 2, 2025
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Summary
Resolves the imports following the latest restructuring of the
kale.embedAPI.Changes
Mogonetinmodel.pyformultiomics-cancer-classificationfromkale.embed.mogonettokale.embed.model_lib.mogonet.best.ckptmodel to follow latest API changes, includingparametrizationsforweight_normand renaming theGCNlayer fromdrug_extractortomolecular_extractor.Note