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Build fails on Apple Silicon: <code>-mno-avx2</code> flag unsupported by ARM Clang

Status: Open.

#503 In pachterlab/kallisto;

· jasondk opened on Feb 10, 2026

Qutification of gene-level TPM

Status: Open.

#502 In pachterlab/kallisto;

· TaoHJiang opened on Feb 4, 2026

Kallisto not running on some of my samples

Status: Open.

#500 In pachterlab/kallisto;

· guptas2005 opened on Jan 28, 2026

tests: kallistro: corrupted size vs. prev_size

Status: Open.

#498 In pachterlab/kallisto;

· iam-TJ opened on Oct 21, 2025

[question]: lr-kallisto - Dockerfile for kallisto and bustools to aid with long reads

Status: Open.

#497 In pachterlab/kallisto;

· tamuanand opened on Sep 11, 2025

How to quantify novel transcripts

Status: Open.

#496 In pachterlab/kallisto;

· MR-D-CJ opened on Aug 18, 2025

Kmer size in Kallisto Index

Status: Open.

#494 In pachterlab/kallisto;

· Anupriya014 opened on Aug 7, 2025

Can bifrost be unbundled?

Status: Open.

#491 In pachterlab/kallisto;

· outpaddling opened on May 27, 2025

Mapping rate difference between long and short reads

Status: Open.

#489 In pachterlab/kallisto;

· linley-sherin opened on May 14, 2025

Compilation failure with clang 19

Status: Open.

#488 In pachterlab/kallisto;

· outpaddling opened on May 14, 2025

Kallisto RNA velocity indices

Status: Open.

#486 In pachterlab/kallisto;

· willy870708 opened on Apr 18, 2025

.h5 file generation

Status: Open.

#485 In pachterlab/kallisto;

· altarrf opened on Apr 17, 2025