Merge pull request #53 from BobLiterman/MemorySaver_

Superfluous scripts (uncalled by SISRS) were removed and this version represents the final Bash release prior to Python porting.

Merge pull request #50 from anderspitman/test-output-alignment

Add first actual test case

1.6

version for ms

added species-specific alignment option

my version 1.1

Version tagged