Starred repositories
Create mind maps to learn new things using AI.
BanditPAM C++ implementation and Python package
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
A markup-based typesetting system that is powerful and easy to learn.
A light-weight, flexible, and expressive statistical data testing library
Open Lakehouse Format for Multimodal AI. Convert from Parquet in 2 lines of code for 100x faster random access, vector index, and data versioning. Compatible with Pandas, DuckDB, Polars, Pyarrow, a…
Streamlit — A faster way to build and share data apps.
Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have differ…
Module for embedding igv.js in an IPython notebook
A declarative interactive genomics visualization library for Python.
Grammar of Scalable Linked Interactive Nucleotide Graphics
A calibre plugin that generates Kindle Word Wise and X-Ray files for KFX, AZW3, MOBI and EPUB eBook.
Turn an existing conda environment into a Singularity container
Collection of Statically linked binaries for Linux. Suited for Forensics
Take a modern Python codebase to the next level of performance.
A fast CSV command line toolkit written in Rust.
macOS window manager with Vim–like hotkeys
Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib and seaborn.
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
A GPU-accelerated cross-platform terminal emulator and multiplexer written by @wez and implemented in Rust
A simple bookshelf made in CSS, HTML and vanilla JS.
A set of scripts to synchronize a kobo reader with popular cloud services
A library of free open source icons for science illustrations in biology and chemistry
A collection of modern/faster/saner alternatives to common unix commands.