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Showing results
Julia 3 Updated Oct 8, 2025
SCSS 587 224 Updated Mar 23, 2021

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Python 319 88 Updated Jul 7, 2023

Clone of the Bioconductor repository for the SingleR package.

R 196 20 Updated Oct 19, 2025

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

R 310 48 Updated Apr 23, 2024

Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.

R 42 19 Updated Mar 3, 2017

R toolkit for single cell genomics

R 2,544 975 Updated Oct 24, 2025

analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)

R 12 2 Updated Jun 16, 2016