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  1. Bandage Bandage Public

    a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

    C++ 646 108

  2. Unicycler Unicycler Public

    hybrid assembly pipeline for bacterial genomes

    C++ 623 137

  3. Trycycler Trycycler Public

    A tool for generating consensus long-read assemblies for bacterial genomes

    Python 333 32

  4. Badread Badread Public

    a long read simulator that can imitate many types of read problems

    Python 246 24

  5. Polypolish Polypolish Public

    a short-read polishing tool for long-read assemblies

    Rust 194 15

  6. Autocycler Autocycler Public

    A tool for generating consensus long-read assemblies for bacterial genomes

    Rust 193 16