Signed LD profile regression code

LD Score Regression (LDSC)

Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data

Approximate full likelihood inference of selection / inferring allele frequency trajectories

Simulate genealogical trees and genomic sequence data using population genetic models

Tools for dealing with tree sequences coming to and from SLiM.

Wright-Fisher Exact Solver

Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

(fork with minor changes to output) discoal is a coalescent simulation program capable of simulating model with recombination, selective sweeps, and demographic changes including population splits,…

discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

Code and notebooks for review of Pitt et al, 2016