Keep state variables occurring in INIT in COI analysis #179
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As discussed elsewhere, there was an issue with state variables being removed from the system. Since COI ignores the initial state constraints, some removed variables may appear in
init. When those are removed, the transition system becomes invalid (i.e. it contains non-variables in init). This prevented us from use COI with some techniques. This PR simply doesn't remove those state variables. This should not impact performance too much because those variables only occur in init.If it ends up affecting performance negatively, we can look into analyzing init to remove the state variables. This is not so simple though, because even for functional transition systems
initcan be arbitrary formulas over current state variables.