An accurate GFF3/GTF lift over pipeline

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

This package contains deep learning models and related scripts for RoseTTAFold

OneDrive Client for Linux

Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

This bartender version could handle arbitrary length of barcode

Maximum likelihood demultiplexing

Code I used/created to analyze bar-seq data.

A simple tool for demultiplexing barcode sequencing experiments.

A bioinformatical pipeline to process Quantitative Insertion-site Sequencing (QIseq) samples

PRECOG is a tool that streamlines growth data pre-processing, phenotypic trait extraction, visualization, distribution and the creation of vast and informative phenomics databases.

R Package growthrates

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framework in Python.

Alignment - BWA MEM, samtools view, samtools sort, Picard MarkDuplicates

Python bindings to bwa mem

A simple variant calling and annotation pipeline using BWA, GATK, SAM and Picard.

BWA and samtools in a docker. Useful for mapping reads, sorting sam/bam files etc.