havic
havic check
havic test
havic detect
havic version

#brew install pyqt --with-python3
pip3 install git+https://github.com/schultzm/HAVIC.git --user

R
install.packages("pheatmap",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("qualpalr",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("ape",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("caper",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("diversitree",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("geiger",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("nlme",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("OUwie",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("phangorn",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("phytools",repos="https://cloud.r-project.org",quiet=TRUE)
install.packages("igraph",repos="https://cloud.r-project.org",quiet=TRUE)
source("https://bioconductor.org/biocLite.R")
biocLite("RCurl")
biocLite("GenomicAlignments")
biocLite("Biostrings")
biocLite("Rsamtools")
biocLite("ggtree")
biocLite("Biobase")
biocLite("matrixStats")
biocLite("tidyverse")