A port of the core elements of the nf-core/wf-human-variation nanopore pipeline to bpipe

A visualization package to explore the SCODA results

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Data-driven signal detection for unbiased scRNA-seq data analysis

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Nextflow implementation of grapevine

Bpipe - a tool for running and managing bioinformatics pipelines

Microbiome classification pipeline

Tutorial on using E-utilities

Supercharged experience for multiple models such as ChatGPT, DALL-E and Stable Diffusion.

A comprehensive library for computational molecular biology

[IJCV] FastComposer: Tuning-Free Multi-Subject Image Generation with Localized Attention

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Count bases in BAM/CRAM files

Code Safety Inspection Service

See the main fork of this repository here >>>

A simple nextflow pipeline for running kraken2 and bracken in a docker container

A fast approximate aligner for long DNA sequences

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

GFF and GVF specification documents

A console-based alignment viewer

Demonstrating best practices for bioinformatics command line tools

quality filtering tool for long reads

Python best practices guidebook, written for humans.

Tools for processing FAST5 files from Oxford Nanopore Devices