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Having .raw objects in the constituent modalities can cause incorrect embedding plots when var_names are different

bugSomething isn't workingSomething isn't working

Status: Open.

#162 In scverse/muon;

· timslittle opened on Jun 27, 2025

Add single cell HiC datasets into Muon container

Status: Open.

#159 In scverse/muon;

· Xuyuch opened on Mar 12, 2025

Parse modality prefix for gene IDs

enhancementNew feature or requestNew feature or request

Status: Open.

#156 In scverse/muon;

· gtca opened on Feb 10, 2025

random_state=0 does not set seed in muon.tl.leiden, either a bug or unclear documentation

bugSomething isn't workingSomething isn't working

Status: Open.

#154 In scverse/muon;

· AKMHamid opened on Dec 12, 2024

Document how to make a release

enhancementNew feature or requestNew feature or request

Status: Open.

#153 In scverse/muon;

· grst opened on Dec 10, 2024

Add trusted publishing

enhancementNew feature or requestNew feature or request

Status: Open.

#150 In scverse/muon;

· flying-sheep opened on Oct 25, 2024

Test against pre-releases

enhancementNew feature or requestNew feature or request

Status: Open.

#138 In scverse/muon;

· ivirshup opened on Apr 9, 2024

Improve module import time

enhancementNew feature or requestNew feature or request

Status: Open.

#137 In scverse/muon;

· rpadmanabhan opened on Mar 29, 2024

Add fragment file path to a merged mudata object

enhancementNew feature or requestNew feature or request

Status: Open.

#133 In scverse/muon;

· jolvhull opened on Mar 8, 2024

· 

v0.2.0

Sum duplicate rows in muon.atac.tl.count_fragments_features

enhancementNew feature or requestNew feature or request

Status: Open.

#125 In scverse/muon;

· benjamin-james opened on Aug 31, 2023

Enable <code>gene_symbols</code> argument in mu.pl.embedding

enhancementNew feature or requestNew feature or request

Status: Open.

#124 In scverse/muon;

· racng opened on Aug 30, 2023

Batch correction for joint modality umap

enhancementNew feature or requestNew feature or request

Status: Open.

#123 In scverse/muon;

· GirayEryilmaz opened on Aug 23, 2023