A curated list of awesome libraries, datasets, tutorials, papers, and other resources related to Heart Rate Variability (HRV) analysis. This repository aims to be a comprehensive and organized collection that will help researchers and developers in the world of HRV!
- HRV: Standards of Measurement, Physiological Interpretation and Clinical Use
- Kubios HRV Standard : Kubios HRV Software
- neuropsychology/NeuroKit2 : NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
- MIT-LCP/wfdb-python : Native Python WFDB package
- cbrnr/sleepecg : Sleep stage detection using ECG
- berndporr/py-ecg-detectors : Popular ECG R peak detectors written in python
- scientisst/BioSPPy : Biosignal Processing in Python[Deprecated]
- paulvangentcom/heartrate_analysis_python : HeartPy - Python Heart Rate Analysis Toolkit
- 2002-An advanced detrending method with application to HRV analysis-1196
- 2018-An Open Source Benchmarked Toolbox for Cardiovascular Waveform and Interval Analysis-185 | code-m
- 2011-An Efficient R-peak Detection Based on New Nonlinear Transformation and First-Order Gaussian Differentiator-88 | code
- 2020-RR-APET - Heart rate variability analysis software-15 | code-py
- 2020-Heart rate n-variability (HRnV) and its application to risk stratification of chest pain patients in the emergency department-19 | code-m
- 2021-Heart Rate Variability in Psychology: A Review of HRV Indices and an Analysis Tutorial-87
- 2021-HRnV-Calc: A software package for heart rate n-variability and heart rate variability analysis | code-m
- 2021-Unveiling the Structure of Heart Rate Variability (HRV) Indices: A Data-driven Meta-clustering Approach
- 2022-Comprehensive HRV estimation pipeline in Python using Neurokit2: Application to sleep physiology-1
- https://github.com/nliulab/HRnV-Calc#metrics-descriptions
- https://github.com/cliffordlab/PhysioNet-Cardiovascular-Signal-Toolbox#iii-guide-to-output
- https://www.mdpi.com/1424-8220/21/12/3998 Table 1. A summary of HRV indices according to their respective analysis domains.
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9307944/table/tbl0001/?report=objectonly
| Metrics | Units | Description |
|---|---|---|
| Tiem Domain | ||
| Average RR | ms | The mean of RR intervals |
| SDRR | ms | The standard deviation of RR intervals |
| Average HR | 1/min | The mean of heart rate |
| SDHR | 1/min | The standard deviation of heart rate |
| RMSSD | ms | Square root of the mean squared differences between successive RR intervals |
| NN50 | count | Numbers of RR intervals differ more than 50 ms from the previous intervals |
| pNN50 | % | Percentage of NN50 intervals within the entire RR intervals |
| RR Skewness | - | The skewness of the RR intervals distribution |
| RR Kurtosis | - | The kurtosis of the RR intervals distribution |
| RR Triangular Index | - | The integral of the RR intervals histogram divided by the height of the histogram |
| Frequency Domain | For more detailed documentations of the frequency domain metrics, check out here. | |
| VLF, LF, and HF Peak frequencies | Hz | The peak frequencies in the power spectral distribution (PSD) for VLF, LF, and HF bands |
| VLF, LF, and HF Powers | Absolute powers of VLF, LF, and HF bands | |
| VLF, LF, and HF Power Percentages | % | The percentage for powers of VLF, LF, and HF bands within the overall spectrum |
| LF and HF Normalized Powers | n.u. | Normalized powers for LF and HF bands |
| Total Power | The overall power of the PSD | |
| LF/HF | - | The ratio between the powers of LF and HF bands |
| Nonlinear Domain | ||
| Poincare SD1 and SD2 | ms | The width and length of the eclipse fitted in the Poincare plot |
| App_Ent | - | Approximate entropy |
| Sam_Ent | - | Sample entropy |
| DFA α1 and α2 | - | Short-term and long-term fluctuations of detrended fluctuation analysis (DFA) |
- Heart Rate Variability Analysis with the HRV Toolkit
- Everything You Should Know About Heart Rate Variability (HRV)
- MIT-BIH Polysomnographic Database
- ECG GUDB : High precision ECG Database with annotated R peaks, recorded and filmed under realistic conditions
We welcome your contributions! Please follow these steps to contribute:
- Fork the repo.
- Create a new branch (e.g.,
feature/new-hrv-resource). - Commit your changes to the new branch.
- Create a Pull Request, and provide a brief description of the changes/additions.
Please make sure that the resources you add are relevant to the field of Heart Rate Variability. Before contributing, take a look at the existing resources to avoid duplicates.
This work is licensed under a Creative Commons Attribution 4.0 International License.