Commits

Branch selector

 master

User selector

atrigila

Datepicker

All time

Commit History

Commits on Sep 1, 2025

• Sbwf migrate rnafusion (#8972)

  Show description for 5ce6cef
  

  atrigila

  and

  nvnieuwk

  authored
  5ce6cef

  Copy full SHA for 5ce6cef

Commits on Aug 1, 2025

• Update `rrnatranscripts` and add new module `agat/convertgff2bed` (#8842)

  Show description for b785bb0
  

  atrigila

  and

  rannick

  authored
  b785bb0

  Copy full SHA for b785bb0

Commits on Jul 22, 2025

• Add formula based contrasts to `deseq2` (#8569)

  Show description for 2e24bf8
  atrigila

  authored
  2e24bf8

  Copy full SHA for 2e24bf8

Commits on Jun 22, 2025

• chore: refactor to support limma formula (#8617)

  Show description for 4006954
  

  atrigila

  and

  pinin4fjords

  authored
  4006954

  Copy full SHA for 4006954

Commits on Jun 2, 2025

• feat: add formula and contrasts to limma (#8429)

  Show description for 41d1a6a
  

  atrigila

  and

  grst

  authored
  41d1a6a

  Copy full SHA for 41d1a6a

Commits on May 6, 2025

• bump shinyngs (#8390)

  Show description for d959d63
  atrigila

  authored
  d959d63

  Copy full SHA for d959d63

Commits on Apr 29, 2025

• Unify Summarized Experiment (#7869)

  Show description for 1f00822
  

  atrigila

  and

  pinin4fjords

  authored
  1f00822

  Copy full SHA for 1f00822

Commits on Apr 24, 2025

• bump shinyngs (#8358)

  Show description for d802eff
  atrigila

  authored
  d802eff

  Copy full SHA for d802eff

Commits on Apr 22, 2025

• feat: improve handling of nulls in module (#8341)

  atrigila

  authored
  c48c4b3

  Copy full SHA for c48c4b3

Commits on Apr 16, 2025

• bump samshee (#8316)

  Show description for 1bc6d5b
  atrigila

  authored
  1bc6d5b

  Copy full SHA for 1bc6d5b

• feat: add literal string to make contrasts in `variancepartition/dream` (#8231)

  Show description for a74e1f9
  atrigila

  authored
  a74e1f9

  Copy full SHA for a74e1f9

Commits on Apr 2, 2025

• Support formula in `abundance_differential_filter` and associated modules (#8171)

  Show description for 25c228d
  

  atrigila

  and

  pinin4fjords

  authored
  25c228d

  Copy full SHA for 25c228d

Commits on Mar 25, 2025

• fix: deseq modules displaying full meta as tag instead of meta.id (#7870)

  atrigila

  authored
  6f6b136

  Copy full SHA for 6f6b136

Commits on Mar 24, 2025

• Add new module `decoupler` (#7263)

  Show description for 4dd0678
  

  atrigila

  and

  mahesh-panchal

  authored
  4dd0678

  Copy full SHA for 4dd0678

Commits on Dec 2, 2024

• Fix bug in `RRNATRANSCRIPTS` with harcoded gtf (#7141)

  Show description for 812edf8
  atrigila

  authored
  812edf8

  Copy full SHA for 812edf8

Commits on Sep 23, 2024

• Add nf-core module and subworkflow `mirdeep2` (#6662)

  Show description for 757f60e
  

  3 peopleauthored
  757f60e

  Copy full SHA for 757f60e

Commits on Sep 20, 2024

• Update mirtop version (#6663)

  Show description for 1960623
  atrigila

  authored
  1960623

  Copy full SHA for 1960623

Commits on Sep 13, 2024

• Update mirtop modules and subworkflow (#6635)

  Show description for 43b2b70
  atrigila

  authored
  43b2b70

  Copy full SHA for 43b2b70

Commits on Sep 11, 2024

• Add optional config mode in `mirtrace/qc` (#6623)

  Show description for 6dd363c
  atrigila

  authored
  6dd363c

  Copy full SHA for 6dd363c

Commits on Sep 10, 2024

• Fix `seqcluster` (#6616)

  Show description for 407ff4b
  atrigila

  authored
  407ff4b

  Copy full SHA for 407ff4b

Commits on Sep 9, 2024

• Add `seqcluster` module (#6614)

  Show description for ebfbd5e
  

  atrigila

  and

  sateeshperi

  authored
  ebfbd5e

  Copy full SHA for ebfbd5e

Commits on Sep 6, 2024

• Add module and subworkflow mirtop (#6587)

  Show description for 9897e69
  atrigila

  authored
  9897e69

  Copy full SHA for 9897e69

Commits on Sep 5, 2024

• update mirtrace (#6593)

  atrigila

  authored
  d576f75

  Copy full SHA for d576f75

Commits on Sep 2, 2024

• Add `mirTrace` module (#6507)

  Show description for c5a9626
  atrigila

  authored
  c5a9626

  Copy full SHA for c5a9626

Commits on Aug 5, 2024

• change output directory of bclconvert & bcl2fastq (#6112)

  Show description for 2226183
  atrigila

  authored
  2226183

  Copy full SHA for 2226183

Commits on Jul 29, 2024

• Update checkqc to 4.0.3 (#6051)

  Show description for b4d87af
  atrigila

  authored
  b4d87af

  Copy full SHA for b4d87af

Commits on May 14, 2024

• add module vcffixup (#5597)

  Show description for 072cf56
  atrigila

  authored
  072cf56

  Copy full SHA for 072cf56

Commits on Oct 9, 2023

• bcftools/convert: add hap legend extension (#3923)

  Show description for 988193a
  

  atrigila

  and

  SPPearce

  authored
  988193a

  Copy full SHA for 988193a

Commits on Sep 27, 2023

• New module: quilt/quilt (#3804)

  Show description for 668a438
  atrigila

  authored
  668a438

  Copy full SHA for 668a438

Commits on Mar 28, 2023

• new module: indeppairwise (#3150)

  Show description for cd0a346
  atrigila

  authored
  cd0a346

  Copy full SHA for cd0a346

Commits on Mar 16, 2023

• New module: Plink exclude (#3032)

  Show description for 2d69c3e
  

  atrigila

  and

  nvnieuwk

  authored
  2d69c3e

  Copy full SHA for 2d69c3e

Commits on Mar 14, 2023

• update bcftools norm (#3023)

  Show description for bcad95f
  atrigila

  authored
  bcad95f

  Copy full SHA for bcad95f

Commits on Mar 8, 2023

• Plink indep (#2992)

  Show description for 6c2a440
  atrigila

  authored
  6c2a440

  Copy full SHA for 6c2a440

Commits on Mar 7, 2023

• New module: Plink bcf (#2981)

  Show description for f58d2ef
  atrigila

  authored
  f58d2ef

  Copy full SHA for f58d2ef

Commits on Feb 1, 2023

• New module: Admixture (#2816)

  Show description for 0070c63
  

  atrigila

  and

  nvnieuwk

  authored
  0070c63

  Copy full SHA for 0070c63

Pagination

Previous

Next