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Source code for "Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAE," in pytorch. NeurIPS 2022

Python 18 2 Updated Jan 13, 2023

Code and model weights for PoET-2, a retrieval-augmented multimodel protein language model for protein sequence generation and representation learning

Python 15 1 Updated Aug 20, 2025

Transformer And Rapid Dimensionless Instance Segmentation

Jupyter Notebook 18 4 Updated Oct 14, 2025

Inference code for PoET: A generative model of protein families as sequences-of-sequences

Python 82 5 Updated Apr 24, 2024

Simple python interface for the OpenProtein.AI REST API.

Python 14 Updated Sep 12, 2025

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

Python 262 76 Updated Jun 16, 2021

Source code for "Explicitly disentangling image content from translation and rotation with spatial-VAE" - NeurIPS 2019

Python 66 19 Updated Dec 2, 2019

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising w…

Jupyter Notebook 198 70 Updated Sep 8, 2025

Multi-task and masked language model-based protein sequence embedding models.

Python 104 21 Updated Jun 16, 2021

A specification that python filesystems should adhere to.

Python 1,237 410 Updated Oct 28, 2025

Public release of Ptolemy package for automated targeting of Cryo-EM grids

Jupyter Notebook 18 2 Updated Mar 9, 2025

Neural networks for cryo-EM reconstruction

Python 351 84 Updated Oct 24, 2025