Fast genome-wide functional annotation through orthology assignment

SURPI

Google Drive Public File Downloader when Curl/Wget Fails

A user-friendly workflow for phylogenomics

Filtering and trimming of long read sequencing data

Adapter trimmer for Oxford Nanopore reads using ab initio method

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

Public Health England SNP calling pipeline.

A genome diagram generator for microbes and organelles

Rapid large-scale prokaryote pan genome analysis

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

Compares metagenomics and total RNA-Seq data-processing pieplines for microbial identification. Includes scripts to run pipelines on HPC clusters or locally, as well as scripts for statistical anal…

This is a collection to restore all the Italian brainrot.

R Markdown Résumés and CVs

🆔 Scan contig files against PubMLST typing schemes

Simple script to generate Krona charts for all samples in an OTU table file

simple program to rotate a circular sequence to start at a given position or string

Precise host read removal

An R package for data analysis in microbial community ecology

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

benchmark for testing VPS, PCs; fast and simple, Scripts for automating the execution and results collection using the command-line version of Geekbench

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

Easy Metagenome Pipeline

Plot genome alignment figure using progressiveMauve & genoPlotR

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Make Complex Heatmaps

Add biological annotations to variants in a given VCF file.