This repository contains tools for ImageJ1 by Timo Rantalainen (@tjrantal) that can be used to perform the following analyses on Stratec pQCT files:

• Conventional bone analyses (e.g. cortical area and volumetric bone mineral density)
• Regional bone mineral density calculations (density distribution)¹
• Bone marrow analysis for a tubular bone²
• Conventional soft tissue analyses (e.g. subcutaneous fat cross-sectional area, muscle cross-sectional area)²

It also adds support for the Stratec pQCT file format.

1. Rantalainen T, Nikander R, Heinonen A, Daly RM, Sievanen H. An open source approach for regional cortical bone mineral density analysis. J. Musculoskelet. Neuronal Interact. 2011 Sep;11(3):243-8.
2. Rantalainen T, Nikander R, Heinonen A, Cervinka T, Sievanen H, Daly RM. Differential Effects of Exercise on Tibial shaft Marrow Density in Young Female Athletes. J. Clin. Endocrinol. Metab., in press.