A minimal copy fastq and fasta reader built for parallel support and paired end processing

Direct loading from PDB database using protein IDs

Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅

A new high-resolution long-read metagenome assembler for even noisy reads

A high efficiency binary format for sequencing data

Fast DNA search and [host] depletion using minimizers

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

Fast sequence distance estimates

FASTQ sequence quality visualisation with Emoji

E. coli K-antigen group 2 and group 3 typing database

a cute metasearch engine

Parallel Implementation of HMM on Multicore Platform

A Rust library providing fully dynamic sets of k-mers with high locality

Split k-mer analysis – version 2

Fast pairwise transmission inference from single genome and/or metagenomic data

Compile binaries for macOS on Linux

zlib replacement with optimizations for "next generation" systems.

Heavily optimized library for DEFLATE/zlib/gzip compression and decompression

Gzip Decompression and Random Access for Modern Multi-Core Machines

A Fast and Easy to use microframework for the web.

BS::thread_pool: a fast, lightweight, modern, and easy-to-use C++17 / C++20 / C++23 thread pool library

Self-contained, multi-threaded fasta/q parser

⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.

A modern, C++-native, test framework for unit-tests, TDD and BDD - using C++14, C++17 and later (C++11 support is in v2.x branch, and C++03 on the Catch1.x branch)

Phylogenetic inference using Stan

Assembled Genomes Compressor

Epidemiological modeling framework for pathogen population genetics and evolution.

Efficient phylogenetic tree inference for massive taxonomic datasets