🐚 Collect and classify species of organisms.

A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier

Implementation of "Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution" [ECCV 2024]

Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.

V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.

Generates images of the Tree of Life.

Code accompanying Somatic and germline mutational processes across the Tree of Life manuscript

Pipeline for constructionof phylogenetic trees from all domains

My PhD thesis

A high-performance C# Windows Forms application for visualizing the Tree of Life. This project demonstrates how to handle and render large hierarchical datasets (36,000+ nodes) efficiently by implementing a Quadtree for spatial indexing and custom radial layout algorithms.

MNHN-Tree-Tools a software for phylogenetic inference of millions of sequences