australian-biocommons

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Germline structural variant calling pipeline for short read WGS datasets

workflow bioinformatics pipeline genomics nextflow ngs manta bam survivor structural-variants smoove tiddit germline-variant-calling annotsv dsl2 australian-biocommons

Template for creating Nextflow DSL2 pipelines

Report summary statistics relating to quality of bam files with Nextflow

bioinformatics genomics nextflow ngs alignment multiqc sambamba bam samtools qualimap mosdepth australian-biocommons

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