a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results

[THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble https://github.com/broadinstitute/viral-phylo https://github.com/broadinstitute/viral-classify https://github.com/broadinstitute/viral-pipelines

Simple pure Python SAM parser and objects for working with SAM records

Frequently used commands in bioinformatics

My bioinfo toolbox

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.

mapping pipeline for ancient DNA

ZAM: Zero parameter Attention Module

pythonic wrapper for htslib

EE7207 Neural & Fuzzy Systems

Get the consensus sequences from SAM (and BAM) files, ignoring the reference

Subset of fast5 files contained in a fastq, BAM, or SAM file.

Implementation of BAM: Bottleneck Attention Module with TensorFLow

General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)

RNA editing discovery from NGS data.

Get sex info from BAM file

A universal model datastructure for design, analysis, fabrication, and construction

Summarize Alignment Pile by Nucleotide

A genomic language model that detects amplification artifacts for accurate structural variant calling in long-read single-cell sequencing