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bedtools
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RNAseq pipeline for alternative splicing junctions
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Updated
Apr 23, 2025 - R
RNA-seq pipeline in R/Bash enables QC, alignment, read counting, and differential expression using Bioconductor; reproducible workflow on Ubuntu with Conda. 🐙
snakemake pipeline genomics notebook panel jupyter-notebook bioinformatics-pipeline transcript rnaseq read-counts illumina bedtools salmon rna-seq-analysis rsem gff ngs-analysis snpeff
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Feb 26, 2026 - R
Sequencing data preprocessing
mapping ngs sequencing entrez bigwig chip-seq peak-caller wiggle galaxy-project fastq bedtools ncbi samtools sra ucsc-browser bowtie2 chip-seq-pipelines galaxy-server macs2 bedfile
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Jun 18, 2018 - R
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
rna-seq r statistics genomics ngs data-visualization data-visualisation chip-seq atac-seq bedtools daily-tasks datamining qpcr deeptools qpcr-analysis cutandtag
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Updated
Jan 26, 2026 - R
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