Molecular convergence detection
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Oct 6, 2025 - Python
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convergent-evolution
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CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
evolution duplication comparative-genomics transposition synteny copy-number-variation structural-variation convergent-evolution orthologs co-linearity
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Jun 9, 2022 - Python
Comparative molecular life history of spontaneous canine and human gliomas. Amin et al. Cancer Cell 2020
documentation methods comparative-genomics convergent-evolution canine pediatric-cancer human-glioma
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Mar 23, 2023 - HTML
Scripts related to the mansucript "Convergent evolution in Afrotheria and non-afrotherians demonstrates high evolvability of the mammalian inner ear" (Grunstra et al.)
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Jul 16, 2024 - R
Tools for analysing discrete data in a phylogenetic context, e.g. discrete morphological phylogenetic characters. Calculate relative homoplasy, explore phylomorphospace. Integrates functions from 'ape', 'phangorn' and 'phytools'.
morphology phylogenetics morphological-analysis phylogeny convergent-evolution discrete-character-data homoplasy discrete-traits phylomorphospace
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Oct 23, 2025
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