diapasef
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Beta-DIA is a partially open-source, free-to-use Python software that provides comprehensive peptide/protein identification and accurate quantification results for single-shot diaPASEF data.
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Jun 24, 2025 - Python
Full-DIA is a freely available software for single-cell diaPASEF data analysis that leverages deep learning to improve proteome coverage, quantitative accuracy and analysis speed. Most notably, Full-DIA is the first to automatically generate a missing-value-free protein matrix under global FDR control.
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Dec 20, 2025 - Jupyter Notebook
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