This repository contains some phylogenetic trees I have done for practical purposes.

This directory contains code for the paper A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean. If you want to run this code, I recommend downloading this code and the data directory from Data Dryad.

This repository offers a tutorial for assembling RADseq data and performing basic population genetic and phylogenetic analyses. It runs on Google Cloud Platform using Jupyter notebooks and covers RADseq data processing, population structure analysis, and phylogenetic tree inference and plotting.

Rcpp extension of eigvaldisp

Working on my deliverables et al. for the Species & Speciation module in my Honours year (run by A/Prof Muthama Muasya)

Leo Blondel, Savandara Besse, Cassandra Extavour (2021)

Provides a means of running the Avida-ED educational software that guards against premature bit-rot.

Examine paleoTS model selection performance with time series length

R package for average evolvability measures

A set of functions to plot BEAST outputs

The graph-based fitness landscape analysis framework

ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.

R codes for simulating and detecting punctuated evolution in any clades, from dinosaurs to viruses

Biomimetic Schlieren vision as a sensory modality, theoretical exploration.

Breitman Lab website

A workflow to simulate selective sweeps in SLiM and turn the results into images

Source Code for cgenomicslab webpage

Simulating evolution of behavioral traits with Python

An evolutionary simulation written in Godot.

A set of codes to help plot Discriminant Analysis of Principal Components from Adegenet R package