Optimized Python and C++ implementations of INDELseek, a Perl tool for detecting complex genetic indels in NGS data, with performance improvements, validation, and benchmarking against other variant callers.
python c-plus-plus benchmark bam-files bioinformatics genomics perl computational-biology next-generation-sequencing variant-calling samtools indels sequence-alignment performance-optimization genomic-data-analysis vcf-files ram-monitoring variant-detection gatk4-haplotypecaller indelseek
-
Updated
Nov 27, 2024 - C++