ipyrad

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Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)

structure haplotypes stacks gbs radseq pyrad ipyrad fineradstructure

Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)

rad gbs radseq paralog ipyrad

A simple script to convert fasta and nexus alignments into HDF5 databases compatible with Superbpp, ipyrad and ipyrad analysis

converter ipyrad superbpp

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