Versatile open-source tool for microbiome analysis
Ultra-fast and memory-efficient (meta-)genome assembler
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Fast and accurate genomic distances using HyperLogLog
LAMBDA – the Local Aligner for Massive Biological DatA
Bonsai: Fast, flexible taxonomic analysis and classification
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Estimate metagenomic coverage and sequence diversity
Fast and space-efficient taxonomic classification of long reads
gargammel is an ancient DNA simulator
Fast in-silico normalization algorithm for NGS data
Tools and utilities for running Dockerized metagenomics tools in the Cloud
genome sized sequences clustering
mGEMS Genomic epidemiology with mixed samples
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
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