Inpactor2: LTR retrotransposon detector and classificator using Deep Learning
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Jun 17, 2025 - Jupyter Notebook
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plant-genomics
Here are 9 public repositories matching this topic...
An R package to identify plant transcription factors from protein sequence data and classify them in families
transcription-factors plants rstats gene-families hidden-markov-models protein-domains functional-genomics plant-genomics
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Mar 14, 2023 - R
"ć¤Ťç‰©ĺźşĺ› ç»„"(plantgenomes)微信公众号
bioinformatics genomics plant weixin wechat genomes plantgenomes plantgenomics plant-genomics plant-genomes
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Jul 19, 2022
NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.
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Aug 2, 2023 - Python
Phylogenetic tree of LAR and other PIP family enzymes as shown in Güngör et al. 2020. This repository details all code and intermediate files used.
biology open-data open-science orthologues phylogeny science-research protein-evolution open-notebook plant-genetic-resources plant-genomics
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Oct 6, 2020 - Jupyter Notebook
An R interface to the PLAZA database for plant comparative genomics
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Jul 28, 2025 - R
Data and code used in the Plant Genomes dashboard
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Mar 13, 2022 - R
Phylogeny and classification of Azolla filiculoides MYB genes
transcription-factors biology open-data open-science phylogeny science-research protein-evolution open-notebook plant-genetic-resources plant-genomics
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Feb 26, 2021 - HTML
Hub for graduate research and collaboration under Prof. Mitch Cruzan.
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Oct 22, 2025
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