Patpat: A Python-based framework for searching public proteomics datasets
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Mar 29, 2025 - Python
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proteome-discoverer
Here are 9 public repositories matching this topic...
Complementary Finder and MSn deconvolution processing nodes for Thermo Proteome Discoverer 2.x.
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Mar 24, 2017 - C#
Inspecting the quality of isobaric labeling proteomic data in a Jupyter notebook. Data output from Proteome Discoverer.
python data-visualization jupyterlab proteomics data-wrangling mass-spectrometry data-quality quantitative-proteomics proteomics-data-analysis proteome-discoverer isobaric-labeling
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Mar 15, 2022 - Jupyter Notebook
R package and Shiny app for the dowstream analysis of quantitative proteomic data
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Nov 7, 2025 - R
Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh
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Mar 23, 2022 - Python
QC scripts for LC-MS proteomic equipment based on Proteome Discoverer 2.4 output
sqlite-database proteomics mass-spectrometry proteomics-data lumos orbitrap-ms proteome-discoverer qc-scripts mass-spectrometer
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Mar 15, 2022 - Python
Provides easy access to Thermo Discoverer platform results
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Sep 9, 2025 - Python
A simple python script to fix scan numbers in result files generated by Proteome Discoverer.
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Jun 19, 2024 - Python
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