Picotti lab data analysis package.

Annotation helper tool for the manual curation of transposable element consensus sequences

Seamless Integration of BLAST Sequence Searches in R

Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape

Amino acid modifications for mass spectrometry

A simple interface to the Human Protein Atlas

seq2Fun provides function to annotate protein or coding sequences with KEGG pathways

Plot Protein: Visualization of Mutations with Conservation

R Shiny based browser for gene expression data

R package: BALCONY (Better ALignment CONsensus analYsis)

R shiny app to analyse mass photometry data (events)

R shiny app to analyse single-angle dynamic light scattering data

PRESR is a predictor of pathogenicity of MUNC18-1 variants

A nextflow pipeline to cluster sets of proteins.

Analysis from Leduc and Slavov (2025): Protein degradation and growth dependent dilution substantially shape mammalian proteomes

Protein Quality Hub

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

🌟 Shiny Dashboard to visualize transcripts and proteins localised to protrusions.

Code for the analysis and figures for the paper: Manguy J, Shields DC. Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles. Royal Society Open Science. 2019 Oct 16;6(10):190939. Available from: https://royalsocietypublishing.org/doi/10.1098/rsos.190939

viral protein Diversity dynamics Visualization in R (vDiveR) R Shiny Application