Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Navigation Menu

Appearance settings

trackmate-sc

GitHub Copilot
Write better code with AI

GitHub Spark New
Build and deploy intelligent apps

GitHub Models New
Manage and compare prompts

GitHub Advanced Security
Find and fix vulnerabilities

Actions
Automate any workflow
Codespaces
Instant dev environments

Issues
Plan and track work

Code Review
Manage code changes

Discussions
Collaborate outside of code

Code Search
Find more, search less
Explore

Why GitHub

Documentation

GitHub Skills

Blog
Integrations

GitHub Marketplace

MCP Registry
View all features
By company size

Enterprises

Small and medium teams

Startups

Nonprofits
By use case

App Modernization

DevSecOps

DevOps

CI/CD

View all use cases
By industry

Healthcare

Financial services

Manufacturing

Government

View all industries
View all solutions
Topics

AI

DevOps

Security

Software Development

View all
Explore

Learning Pathways

Events & Webinars

Ebooks & Whitepapers

Customer Stories

Partners

Executive Insights
GitHub Sponsors
Fund open source developers
The ReadME Project
GitHub community articles
Repositories

Topics

Trending

Collections
Enterprise platform
AI-powered developer platform
Available add-ons

GitHub Advanced Security
Enterprise-grade security features

Copilot for business
Enterprise-grade AI features

Premium Support
Enterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

TrackMate

TrackMate is your buddy for everyday tracking.

15 followers
https://imagej.net/plugins/trackmate

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

README.md

TrackMate is your buddy for your everyday tracking.

This organization is an architectural layer housing TrackMate and its extensions.
The primary repository is trackmate-sc/TrackMate.
TrackMate is designed for use as a plugin for Fiji.
See also the TrackMate section of the ImageJ wiki.

Pinned Loading

TrackMate TrackMate Public

TrackMate is your buddy for your everyday tracking.

Java 215 83
TrackMate-examples TrackMate-examples Public

A simple repository that shows how to extend TrackMate with your own modules.

Java 2 9

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All Java TeX

Sort

Select order

Last updated Name Stars

Showing 10 of 23 repositories

TrackMate Public
TrackMate is your buddy for your everyday tracking.

trackmate-sc/TrackMate’s past year of commit activity

Java 215 GPL-3.0 83 19 7 Updated Oct 14, 2025
TrackMate-Spotiflow Public
Spotiflow integration in TrackMate.

trackmate-sc/TrackMate-Spotiflow’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Oct 14, 2025
TrackMate-CTCRunner Public
Batch measurements of the Cell-Tracking-Challenge metrics using TrackMate.

trackmate-sc/TrackMate-CTCRunner’s past year of commit activity

Java 2 AGPL-3.0 1 2 0 Updated Oct 14, 2025
TrackMate-Cellpose Public
Tentative Cellpose integration in TrackMate.

trackmate-sc/TrackMate-Cellpose’s past year of commit activity

Java 7 AGPL-3.0 5 3 1 Updated Sep 15, 2025
MaMuT Public
The fiji plugin for Massive Annotation

trackmate-sc/MaMuT’s past year of commit activity

Java 6 GPL-3.0 6 1 1 Updated Aug 18, 2025
TrackMate-InTRACKtive Public
TrackMate integration of the inTRACKtive track visualizer by the Royer lab.

trackmate-sc/TrackMate-InTRACKtive’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 30, 2025
TrackMate-Geff Public
Input / output of TrackMate files to GEFF

trackmate-sc/TrackMate-Geff’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 30, 2025
TrackMate-Trackastra Public
Trackastra integration as a tracker module in TrackMate.

trackmate-sc/TrackMate-Trackastra’s past year of commit activity

Java 2 GPL-3.0 0 0 0 Updated Jul 19, 2025
TrackMate-StarDist Public
StarDist detection as TrackMate detectors.

trackmate-sc/TrackMate-StarDist’s past year of commit activity

Java 7 GPL-3.0 2 3 0 Updated Jul 18, 2025
TrackMate-MorphoLibJ Public
TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.

trackmate-sc/TrackMate-MorphoLibJ’s past year of commit activity

Java 3 GPL-3.0 0 0 1 Updated Jul 18, 2025

View all repositories

People

Top languages

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.