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40 changes: 34 additions & 6 deletions doc/download.md
Original file line number Diff line number Diff line change
Expand Up @@ -23,11 +23,13 @@ Example request body:
"gender",
"race",
"file_count",
"subject_id"
"subject_id",
"visit.visit_label"
],
"sort": [
{ "file_count": "asc" },
{ "gender": "desc" }
{ "gender": "desc" },
{ "visit.visit_label": "asc" }
]
}
```
Expand All @@ -40,25 +42,51 @@ Example result:
"subject_id": "78",
"file_count": 1,
"gender": "female",
"race": "hispanic"
"race": "hispanic",
"visit": [
{
"visit_label": "label_1"
},
{
"visit_label": "label_2"
}
]
},
{
"subject_id": "45",
"file_count": 3,
"gender": "female",
"race": "hispanic"
"race": "hispanic",
"visit": [
{
"visit_label": "label_3"
},
...
]
},
{
"subject_id": "60",
"file_count": 5,
"gender": "female",
"race": "asian"
"race": "asian",
"visit": [
{
"visit_label": "label_X"
},
...
]
},
{
"subject_id": "58",
"file_count": 13,
"gender": "male",
"race": "white"
"race": "white",
"visit": [
{
"visit_label": "label_Y"
},
...
]
},
...
]
Expand Down
3 changes: 3 additions & 0 deletions doc/queries.md
Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,9 @@ Example query:
},
{
"gender": asc
},
{
"experiments.experimental_description": asc
}
], filter: $filter) {
subject_id
Expand Down
174 changes: 145 additions & 29 deletions package-lock.json

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2 changes: 1 addition & 1 deletion package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@gen3/guppy",
"version": "0.6.0",
"version": "0.6.1",
"description": "Server that support GraphQL queries on data from elasticsearch",
"main": "src/server/server.js",
"directories": {
Expand Down
17 changes: 16 additions & 1 deletion src/components/Utils/queries.js
Original file line number Diff line number Diff line change
Expand Up @@ -129,6 +129,20 @@ const queryGuppyForSubAgg = (
});
};

const rawDataQueryStrForEachField = (field) => {
const splittedFieldArray = field.split('.');
const splittedField = splittedFieldArray.shift();
if (splittedFieldArray.length === 0) {
return (`
${splittedField}
`);
}
return (`
${splittedField} {
${rawDataQueryStrForEachField(splittedFieldArray.join('.'))}
}`);
};

const queryGuppyForRawDataAndTotalCounts = (
path,
type,
Expand All @@ -151,9 +165,10 @@ const queryGuppyForRawDataAndTotalCounts = (
if (gqlFilter) {
typeAggsLine = `${type} (filter: $filter, accessibility: ${accessibility}) {`;
}
const processedFields = fields.map((field) => rawDataQueryStrForEachField(field));
const query = `${queryLine}
${dataTypeLine}
${fields.join('\n')}
${processedFields.join('\n')}
}
_aggregation {
${typeAggsLine}
Expand Down
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