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@paulineribeyre paulineribeyre commented Jul 11, 2025

Depends on uc-cdis/authutils#87, uc-cdis/indexd#403, uc-cdis/gen3datamodel#56, uc-cdis/gen3datamodel#58, uc-cdis/psqlgraph#12, uc-cdis/datamodelutils#34 and uc-cdis/datamodelutils#35

Link to JIRA ticket if there is one: https://ctds-planx.atlassian.net/browse/PPS-2007 and https://ctds-planx.atlassian.net/browse/PPS-2012

New Features

Breaking Changes

Bug Fixes

  • Fix "Authentication Error: Audience doesn't match" errors in Sheepdog running in a local Helm instance

Improvements

  • sqlalchemy 1.4 support
  • Fix typos in logs and comments

Dependency updates

  • sqlalchemy to 1.4.54, authutils to 7.0.0, datamodelutils to 1.1.1, psqlgraph to 3.0.2, gen3datamodel to 3.2.6
  • Sheepdog no longer depends on Indexd to run unit tests

Deployment changes

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The style in this PR agrees with black. ✔️

This formatting comment was generated automatically by a script in uc-cdis/wool.

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coveralls commented Jul 11, 2025

Pull Request Test Coverage Report for Build 19446171417

Details

  • 0 of 0 changed or added relevant lines in 0 files are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage remained the same at 63.079%

Totals Coverage Status
Change from base Build 18663268463: 0.0%
Covered Lines: 2409
Relevant Lines: 3819

💛 - Coveralls

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filepath passed failed error skipped SUBTOTAL
tests/test_graph_submit_and_query.py 8 5 8 1 22
tests/test_data_upload.py 2 1 7 1 11
TOTAL 10 6 15 2 33

Please find the detailed integration test report here

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Please find the ci env pod logs here

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Please find the ci env pod logs here

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Please find the ci env pod logs here

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Please find the ci env pod logs here

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filepath passed skipped SUBTOTAL
tests/test_graph_submit_and_query.py 13 1 14
tests/test_data_upload.py 8 1 9
TOTAL 21 2 23

Please find the detailed integration test report here (login here first)

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Failed to Prepare CI environment

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Failed to Prepare CI environment

Please find the Github Action logs here

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Failed to Prepare CI environment

Please find the Github Action logs here

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Failed to Prepare CI environment

Please find the Github Action logs here

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filepath passed skipped SUBTOTAL
tests/test_graph_submit_and_query.py 13 1 14
tests/test_data_upload.py 8 1 9
TOTAL 21 2 23

Please find the detailed integration test report here

Please find the Github Action logs here

george42-ctds
george42-ctds previously approved these changes Nov 17, 2025
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Looks good to me.

@paulineribeyre paulineribeyre marked this pull request as ready for review November 17, 2025 22:04
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Looks good.

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filepath passed skipped SUBTOTAL
tests/test_graph_submit_and_query.py 13 1 14
tests/test_data_upload.py 8 1 9
TOTAL 21 2 23

Please find the detailed integration test report here

Please find the Github Action logs here

@paulineribeyre paulineribeyre merged commit 8ad3d90 into master Nov 17, 2025
10 checks passed
@paulineribeyre paulineribeyre deleted the feat/no-aud-check branch November 17, 2025 22:56
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4 participants