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@uclanelsonlab

UCLA Nelson Lab

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  1. nl-rna-seq_wf nl-rna-seq_wf Public

    RNA-seq for rare diseases pipeline using nextflow

    Nextflow 1

  2. udn_client udn_client Public

    copy files from UDN Gateway (AWS backend) to DNAnexus

    HTML

  3. wgs_qc_wf wgs_qc_wf Public

    Workflow used to check QC for WGS data

    Nextflow

  4. ExpansionHunter ExpansionHunter Public

    Forked from Illumina/ExpansionHunter

    A tool for estimating repeat sizes

    C++

  5. pipeline-align-DNA pipeline-align-DNA Public

    Forked from uclahs-cds/pipeline-align-DNA

    Nextflow pipeline to align paired DNA FASTQs and sort, mark duplicates, and index resulting alignment

    Nextflow

  6. pipeline-recalibrate-BAM pipeline-recalibrate-BAM Public

    Forked from uclahs-cds/pipeline-recalibrate-BAM

    Nextflow pipeline to perform Indel Realignment and Base Quality Score Recalibration

    Nextflow

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