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Lonardi Bioinformatics Lab, University of California, Riverside

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  1. PGV PGV Public

    Reference-agnostic Representation and Visualization of Pan-genomes

    Python 18 3

  2. Novo_Stitch Novo_Stitch Public

    Novo&Stitch is a genome assembly reconciliation tool based on optical map.

    Python 10 1

  3. DeeplyEssential DeeplyEssential Public

    Deep neural network based prediction model for gene essentiality prediction in microbes

    Python 10 1

  4. Chimericognizer Chimericognizer Public

    Chimericognizer is a novel and accurate chimeric contigs correction tool based on optical maps.

    Python 8 1

  5. MSTmap MSTmap Public

    A software tool that builds genetic linkage maps efficiently and accurately

    C++ 7

  6. OMGS OMGS Public

    OMGS is a fast and accurate genome scaffolding tool with one or multiple Bionano optical maps

    Python 7 1

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