Pandas or Polars DataFrames to Interactive DataTables

Processing scripts for Bin Chicken manuscript

Processing scripts for GlobDB (https://globdb.org)

This Python package contains a collection of scripts and tools for including in MGnify pipelines

Create Layout Plots of Biological Culture Plates and Microplates

Run assembler (Canu, flye, hifiasm) on a set of long read files

The set of NGS processing pipelines used at Babraham

The scripts for doing automated run processing from our sequencing facility

Python utilities to manage Oxford Nanopore sequencing data within the Bioinformatics Core Facility (BCF)

Protocols and helper scripts for Opentrons OT-2 lab robot

Process raw Oxford Nanopore data, generate html report, and do de novo assembly (plasmid, amplicon, bacterial genome)

interactive & hardware agnostic SDK for lab automation

Fast and accurate sequence demultiplexing

Glue between Clinical Genomics apps

A schema-agnostic parser and writer for illumina® sample sheets v2 and similar documents.

Scripts, utilities and programs for genomic bioinformatics.

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

An automated post sequencing data processing pipeline for Illumina HiSeq

QC checks and metrics for Illumina NGS data

Processing and analysis of data coming from Illumina sequencing machines

Share of the SQuirreL SQL source code originating from SourceForge, see https://squirrelsql.org

Sequana: a set of Snakemake NGS pipelines

Sequana demultiplexing pipeline

Plugin for MultiQC specific to use with Illuminatus pipeline