Add missing file (#18)

* Add missing file

* Update 10kseqs.txt

* Ran precommit

Co-authored-by: Andrew White <[email protected]>

Tempered starting logits and added MCMC baseline (#15)

* Tempered starting logits and added MCMC baseline

* Fixed pre-commit

* Made starting logits even smaller

* Turned-up learning rate on BO

* Reduced learning rate and starting logit size

* Trying increasing lr

* Reverted lr increase

* switched to using total variance

* Rearranged BO code order

* modify acquisition funx

* Added tester

* Fixed missing kwarg in tester

* Got different defaults for UCB/EI

* Ran pre-commit on all

* Fixed convergence test

* Added matplotlib to paper reqs

Co-authored-by: Ziyue Yang <[email protected]>

Aligned hyperparameters with paper

Various Fixes (#13)

* first attemp

* Got sequences out, but not seeing consistency

* changed to full variance

* Fixed out of date best in compiling

* Fixed zeros initialization dtype

* Fixed test failures

Fixed over asking bug (#11)

Fixed EOL on README

Added batched asking (#5)

Changed to pypi unirep version

Made it possible to turn off pretraining