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A foundation model for knowledge graph reasoning

Python 596 81 Updated Feb 3, 2025

Toward High-Accuracy Open-Source Biomolecular Structure Prediction.

Python 1,621 212 Updated Feb 11, 2026

Making Protein folding accessible to all!

Jupyter Notebook 2,629 692 Updated Feb 11, 2026

Geometric Latent Diffusion Models for 3D Molecule Generation

Python 271 49 Updated Jun 9, 2023

AlphaFold 3 inference pipeline.

Python 7,587 1,104 Updated Feb 11, 2026
Jupyter Notebook 36 12 Updated Oct 21, 2024

Masked Siamese Networks for Label-Efficient Learning (https://arxiv.org/abs/2204.07141)

Python 463 34 Updated May 9, 2022

Use ImageJ from Python

Python 522 92 Updated Feb 9, 2026

Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"

11 3 Updated Oct 27, 2020

Workflows and interfaces for neuroimaging packages

Python 809 540 Updated Oct 27, 2025

Python sample codes and textbook for robotics algorithms.

Python 28,636 7,213 Updated Feb 9, 2026

Model repository for bioimage.io

17 9 Updated Aug 7, 2023

R Package for Aligned Rank Transform for Nonparametric Factorial ANOVAs

R 64 9 Updated Apr 11, 2025

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

Python 1,058 347 Updated Aug 4, 2024

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

Python 221 50 Updated Dec 1, 2025

📈 Performance analysis for Python snippets

Python 1,388 63 Updated Sep 8, 2025

Message Passing Neural Networks for Molecule Property Prediction

Python 2,262 720 Updated Feb 3, 2026

PyTorch3D is FAIR's library of reusable components for deep learning with 3D data

Python 9,793 1,443 Updated Jan 14, 2026

Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

Python 41,250 7,216 Updated Feb 13, 2026

bsuite is a collection of carefully-designed experiments that investigate core capabilities of a reinforcement learning (RL) agent

Python 1,530 186 Updated Apr 13, 2024

A python library for generating annotations in the PASCAL VOC format.

Python 222 56 Updated Aug 25, 2021

Source code submission relating to Chemical Genetic Matrix in Scientific Data

R 1 Updated Aug 21, 2016

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Jupyter Notebook 28,476 7,945 Updated Jun 25, 2024

Files for a tutorial to train SegNet for road scenes using the CamVid dataset

Python 876 516 Updated Jan 26, 2022

Segmentation models with pretrained backbones. Keras and TensorFlow Keras.

Python 4,916 1,046 Updated Aug 21, 2024

Data Portfolio

Jupyter Notebook 11 9 Updated Jul 18, 2018

LabelImg is now part of the Label Studio community. The popular image annotation tool created by Tzutalin is no longer actively being developed, but you can check out Label Studio, the open source …

Python 24,784 6,582 Updated Jun 7, 2024

This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content microscopy data with deep learning"

Python 50 22 Updated Apr 30, 2017

Classifying White Blood Cells with CNNs

Jupyter Notebook 178 84 Updated May 8, 2020

QuPath - Open-source bioimage analysis for research

Java 1,291 328 Updated Feb 13, 2026
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