fix unnecessary clone - clippy warning

Include Cargo.lock for reproducible builds and remove --locked flag f…

…rom CI

better handling of ca certficate depending on operating system

bump, update

remove --locked flag from cargo build step in GitHub Actions again

update dependencies and clean up code in genotype and parse_bam modules

update citation link in README to reflect new publication

update GitHub Actions build step to use --locked flag for cargo again

[skip ci]

update build step in GitHub Actions to use offline mode

update GitHub Actions to use upload-artifact@v4