Terraform module, which takes care of a lot of AWS Lambda/serverless tasks (build dependencies, packages, updates, deployments) in countless combinations 🇺🇦

Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in various languages, mostly bash and perl. For apparix see the …

An interactive tool for the unsupervised clustering of cells from single cell RNA-Seq experiments.

Analysis of single cell RNA-seq data course

Advanced table plugin

Simple generator of DNA barcodes for sequencing experiments

Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.

Example Nextflow pipelines and programming techniques

An interactive explorer for single-cell transcriptomics data

Google Drive direct download of big files

Computational prediction of editing outcomes resulting from Cas9-induced double strand breaks

A collection of modules and sub-workflows for Nextflow

Documentation for Kubespray (Kubernetes) On Openstack

A DSL for data-driven computational pipelines

Pipeline for analysing 10X single cell data

Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

Clone of the Bioconductor repository for the scater package.

Collection of public scRNA-Seq datasets used by our group

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Reference implementation of the ChordPro standard for musical lead sheets.

R package for subset- and name-aware array utility functions

A quick and flexible single-cell RNA-seq processing framework on the cloud

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Miscellany, mostly code supporting blog posts

A tool for fast unsupervised clustering of very large single cell RNA-Seq data

A minimal book example using bookdown

Pretty heatmaps