Stars
Homo v2.1: A program for analysing compositional heterogeneity across aligned sequence data (controls the family-wise error rate and the false discovery rate)
A robust and fast clustering method for amplicon-based studies
R package for comparison of synteny conservation at the genome-wide scale.
A genome visualization python package for comparative genomics
Graphical user interface for exploring space, time, and taxa in the PBDB
Shiny app that plots NCBI genomes size versus protein count
Python library for the symbolic manipulation of phoneme representations
Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).
A complete pipeline for metagenomic analysis
A parser for Google Scholar, written in Python
Transcript assembly and quantification for RNA-Seq
An analysis and visualization platform for 'omics data
Get, parse, and extract information from the SRA metadata files
Make Interactive Complex Heatmaps
A simple code complexity analyser without caring about the C/C++ header files or Java imports, supports most of the popular languages.
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
"Unravelling the Evolution of Animals" following a Bioinformatics pipeline
orthology assignment using phylogenetic and network analyses
A JBrowse plugin for plotting multiple bigwig subtracks