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PR checklist

  • A request was made to have the Spriggan column MLST Scheme reported as MLST<WGS result>_<scheme used>_<organism name>.
  • Test locally and in cloud to verify change.

@dtlyfoung dtlyfoung requested a review from AbigailShockey July 15, 2025 20:36
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Validation data set needs to be updated. Please update the validation test data set and resubmit for review

@dtlyfoung dtlyfoung requested a review from AbigailShockey July 17, 2025 17:25
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Waiting on CDC to confirm what they want in cases of no MLST scheme predicted. Additionally, there should be a space between genus and species, per instruction in original request

@dtlyfoung dtlyfoung requested a review from AbigailShockey July 17, 2025 20:30
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Updated version to 1.6.0 in nextflow.config file since this is new functionality. The new formatting should be noted in the release notes

@dtlyfoung dtlyfoung requested a review from evagunawan July 23, 2025 22:25
@dtlyfoung dtlyfoung merged commit 0bc34db into main Jul 24, 2025
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@dtlyfoung dtlyfoung deleted the dev-mlst-output-update branch July 31, 2025 18:24
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4 participants