A Conditional Multifactorial Contingency (CMC) model to jointly learn the multifactorial effect in large-scale data.

an unsupervised automatic 3D cell detector and manual annotation assistant

An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data

A Completely Annotated Benchmark for Dense 3D Nuclei Image Segmentation

A Convex Optimization Approach to Variance-stabilizing Transformation

An exact and efficient min-cost flow algorithm for data-association in multi-object tracking

Graphical Time Warping

Functional AStrocyte Phenotyping (FASP) is a Fiji plugin that automatically analyzes and characterizes the spatiotemporal functional status of astrocytes from time-lapse Ca2+ imaging data. FASP has…

A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.

Software for segmentation, tracking and analysis of cells in microscope image sequences.

Circulation Network based Data-association for Multi-object Tracking

Multiple Object Tracker, Based on Hungarian algorithm + Kalman filter.

[MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes