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yuyuan871111/README.md

Yu-Yuan (Stuart) Yang

  • 👋 Hi, I’m @yuyuan871111
  • 👀 I’m interested in bioinformatics, computational biology, molecular dynamics, deep learning, machine learning and quantum computing.
  • 👀 I have worked on an application of deep learning to assist neurologist in the diagnosis
  • 🌱 I’m currently learning the semantic segmentation on protein surfaces at protein-ligand binding sites.
  • 💞️ I’m working in Arianna Fornili's lab (Queen Mary University of London), supervised by Richard Pickersgill and Arianna Fornili.
  • 📫 How to reach me:

    email: adp871111[at]gmail.com

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  1. fast_eval_Parkinsonism fast_eval_Parkinsonism Public

    FastEval Parkinsonism is a AI-based online solution for self-assessing parkinsonism in real time.

    HTML 2 1

  2. dimpyplot_chordplot dimpyplot_chordplot Public

    Forked from eachanjohnson/dimpyplot

    A Python frontend to the LigPlot+ program, allowing batch processing of Protein Data Bank (PDB) files through the DIMPLOT algorithm.

    PostScript 1 3

  3. ProBiSEnSe_pymol_plugin ProBiSEnSe_pymol_plugin Public

    ProBiSEnSe represents Protein Binding Site Ensemble Segmentation. Adapted from MaSIF, it is a visualization tool for the feature rich surface files using PyMOL.

    Python

  4. chemosim-lab/ProLIF chemosim-lab/ProLIF Public

    Interaction Fingerprints for protein-ligand complexes and more

    Python 448 87

  5. MDAnalysis/mdanalysis MDAnalysis/mdanalysis Public

    MDAnalysis is a Python library to analyze molecular dynamics simulations.

    Python 1.5k 734

  6. Google Summer of Code 2025 Final Rep... Google Summer of Code 2025 Final Report - MDAnalysis x ProLIF Project 5: H-Bond interactions from implicit hydrogens
    1
    # Google Summer of Code 2025 Final Report - MDAnalysis x ProLIF Project 5: H-Bond interactions from implicit hydrogens
    2
    Contributor: Yu-Yuan (Stuart) Yang ([@yuyuan871111](https://github.com/yuyuan871111))     
    3
    Mentors: Cédric Bouysset ([@cbouy](https://github.com/cbouy), [@cbouysset](https://github.com/cbouysset)), Valerij Talagayev ([@talagayev](https://github.com/talagayev))     
    4
    Organization: [MDAnalysis](https://www.mdanalysis.org/)   
    5