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Automatic annotation of single-cell RNA-seq data from the literature

Python 37 3 Updated Jul 20, 2025

Repository for Nicheformer: a foundation model for single-cell and spatial omics

Jupyter Notebook 96 9 Updated Mar 25, 2025

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,537 1,044 Updated Oct 23, 2025