Central repository for biomolecular foundation models with shared trainers and pipeline components

Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers

Code and data supporting the manuscript "A compact model of Escherichia Coli core and biosynthetic metabolism"

An Enzyme-Thermo constrained Optimization suite for Metabolic Engineering design to improve strain performance

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

Bottom-up MS/MS interrogation & Experiment-specific global annotation

Repository for data, code & figures related to the publication: "Paleome reconstruction reveals Middle and Upper Paleolithic bacterial species and adds time axis in natural product discovery"

MacSyFinder models allowing for a systematic search of anti-phage systems

Taxonomy-guided Identification of Biosynthetic Gene Clusters

MS2Query - machine learning assisted library querying of MS/MS spectra

Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.

Interactive software to analyze and browse mass spectrometry data

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

this repository accompanies the book "Grokking Deep Learning"

Container for PKS Predictor TransAtor