verl: Volcano Engine Reinforcement Learning for LLMs

Official Implementation of "VAU-R1: Advancing Video Anomaly Understanding via Reinforcement Fine-Tuning".

Benchmarking large language models' complex reasoning ability with chain-of-thought prompting

B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction

IgPhyML is a phylogenetic inference package for B cell repertoires. It implements codon substitution models designed that incorporate unique features of somatic hypermutation and allow for paramete…

Implementing DeepSeek R1's GRPO algorithm from scratch

GCtree: phylogenetic inference of genotype-collapsed trees

Train transformer language models with reinforcement learning.

A repo for distributed training of language models with Reinforcement Learning via Human Feedback (RLHF)

[ICML 2025] Satori: Reinforcement Learning with Chain-of-Action-Thought Enhances LLM Reasoning via Autoregressive Search

[COLM 2025] An Open Math Pre-trainng Dataset with 370B Tokens.

Library for fast text representation and classification.

Conditional Transformer Language Model for Controllable Generation

A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org

A tutorial for training a Llama model on protein sequences from scratch

Official release of the ProGen models

Official release of the ProGen models

Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.

Awesome Protein Representation Learning

A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training

Official Implementation of IgGM

Official PyTorch Implementation of "Scalable Diffusion Models with Transformers"

DeepSeekMath: Pushing the Limits of Mathematical Reasoning in Open Language Models