Changes

• fix : resole issue #245 (#583) @cauliyang

📦 Dependencies

• build(deps): bump nox from 2025.5.1 to 2025.10.16 in /.github/workflows (#578) @dependabot[bot]
• build(deps): bump actions/upload-artifact from 4 to 5 (#579) @dependabot[bot]
• build(deps): bump actions/download-artifact from 5 to 6 (#581) @dependabot[bot]
• build(deps): bump pip from 25.2 to 25.3 in /.github/workflows (#580) @dependabot[bot]
• build(deps): bump virtualenv from 20.35.3 to 20.35.4 in /.github/workflows (#582) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 3.2.0 to 3.2.1 (#575) @dependabot[bot]
• build(deps): bump sphinx-click from 6.0.0 to 6.1.0 in /docs (#573) @dependabot[bot]
• build(deps): bump virtualenv from 20.34.0 to 20.35.3 in /.github/workflows (#576) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 3.1.4 to 3.2.0 (#572) @dependabot[bot]
• build(deps): bump poetry from 2.2.0 to 2.2.1 in /.github/workflows (#571) @dependabot[bot]
• build(deps): bump actions/setup-python from 5 to 6 (#568) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.12.4 to 1.13.0 (#569) @dependabot[bot]
• build(deps): bump poetry from 2.1.4 to 2.2.0 in /.github/workflows (#570) @dependabot[bot]
• build(deps): bump actions/download-artifact from 4 to 5 (#563) @dependabot[bot]
• build(deps): bump actions/checkout from 4 to 5 (#565) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 3.1.3 to 3.1.4 (#567) @dependabot[bot]
• build(deps): bump virtualenv from 20.33.1 to 20.34.0 in /.github/workflows (#566) @dependabot[bot]
• build(deps): bump virtualenv from 20.33.0 to 20.33.1 in /.github/workflows (#564) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 3.0.1 to 3.1.3 (#561) @dependabot[bot]
• build(deps): bump pip from 25.1.1 to 25.2 in /.github/workflows (#559) @dependabot[bot]
• build(deps): bump virtualenv from 20.32.0 to 20.33.0 in /.github/workflows (#560) @dependabot[bot]
• build(deps): bump poetry from 2.1.3 to 2.1.4 in /.github/workflows (#562) @dependabot[bot]
• build(deps): bump virtualenv from 20.31.2 to 20.32.0 in /.github/workflows (#555) @dependabot[bot]
• build(deps): bump crazy-max/ghaction-github-labeler from 5.1.0 to 5.3.0 (#542) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.22.0 to 3.0.1 (#554) @dependabot[bot]
• build(deps): bump virtualenv from 20.31.1 to 20.31.2 in /.github/workflows (#552) @dependabot[bot]
• build(deps): bump pip from 25.1 to 25.1.1 in /.github/workflows (#550) @dependabot[bot]
• build(deps): bump virtualenv from 20.30.0 to 20.31.1 in /.github/workflows (#551) @dependabot[bot]
• build(deps): bump nox from 2025.2.9 to 2025.5.1 in /.github/workflows (#547) @dependabot[bot]
• build(deps): bump pip from 25.1 to 25.1.1 in /.github/workflows (#548) @dependabot[bot]
• build(deps): bump poetry from 2.1.2 to 2.1.3 in /.github/workflows (#549) @dependabot[bot]
• build(deps): bump virtualenv from 20.29.3 to 20.30.0 in /.github/workflows (#544) @dependabot[bot]
• build(deps): bump pip from 25.0.1 to 25.1 in /.github/workflows (#546) @dependabot[bot]
• build(deps): bump poetry from 2.1.1 to 2.1.2 in /.github/workflows (#543) @dependabot[bot]
• build(deps): bump virtualenv from 20.29.2 to 20.29.3 in /.github/workflows (#539) @dependabot[bot]
• build(deps): bump nox-poetry from 1.1.0 to 1.2.0 in /.github/workflows (#537) @dependabot[bot]
• build(deps): bump virtualenv from 20.29.1 to 20.29.2 in /.github/workflows (#536) @dependabot[bot]
• build(deps): bump virtualenv from 20.29.1 to 20.29.2 in /.github/workflows (#532) @dependabot[bot]
• build(deps): bump nox from 2024.10.9 to 2025.2.9 in /.github/workflows (#533) @dependabot[bot]
• build(deps): bump myst-parser from 4.0.0 to 4.0.1 in /docs (#534) @dependabot[bot]
• build(deps): bump poetry from 2.0.1 to 2.1.1 in /.github/workflows (#535) @dependabot[bot]
• build(deps): bump pip from 25.0 to 25.0.1 in /.github/workflows (#530) @dependabot[bot]
• build(deps): bump nox from 2024.10.9 to 2025.2.9 in /.github/workflows (#531) @dependabot[bot]
• build(deps): bump pip from 24.3.1 to 25.0 in /.github/workflows (#528) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.12.3 to 1.12.4 (#527) @dependabot[bot]
• build(deps): bump release-drafter/release-drafter from 6.0.0 to 6.1.0 (#523) @dependabot[bot]
• build(deps): bump virtualenv from 20.28.1 to 20.29.1 in /.github/workflows (#525) @dependabot[bot]
• build(deps): bump nox-poetry from 1.0.3 to 1.1.0 in /.github/workflows (#526) @dependabot[bot]
• build(deps): bump poetry from 2.0.0 to 2.0.1 in /.github/workflows (#519) @dependabot[bot]
• build(deps): bump poetry from 1.8.5 to 2.0.0 in /.github/workflows (#513) @dependabot[bot]
• build(deps): bump virtualenv from 20.28.0 to 20.28.1 in /.github/workflows (#511) @dependabot[bot]
• build(deps-dev): bump ruff from 0.8.4 to 0.8.5 (#512) @dependabot[bot]
• build(deps-dev): bump mypy from 1.13.0 to 1.14.1 (#510) @dependabot[bot]
• build(deps-dev): bump ruff from 0.8.3 to 0.8.4 (#506) @dependabot[bot]
• build(deps-dev): bump psutil from 6.1.0 to 6.1.1 (#507) @dependabot[bot]
• build(deps): bump urllib3 from 2.2.3 to 2.3.0 (#509) @dependabot[bot]
• build(deps-dev): bump ruff from 0.8.2 to 0.8.3 (#505) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.12.2 to 1.12.3 (#504) @dependabot[bot]
• build(deps): bump typer from 0.15.0 to 0.15.1 (#500) @dependabot[bot]
• build(deps-dev): bump ruff from 0.8.1 to 0.8.2 (#501) @dependabot[bot]
• build(deps): bump loguru from 0.7.2 to 0.7.3 (#502) @dependabot[bot]
• build(deps): bump poetry from 1.8.4 to 1.8.5 in /.github/workflows (#503) @dependabot[bot]
• build(deps-dev): bump ruff from 0.8.0 to 0.8.1 (#496) @dependabot[bot]
• build(deps-dev): bump pytest from 8.3.3 to 8.3.4 (#497) @dependabot[bot]
• build(deps): bump typer from 0.13.1 to 0.15.0 (#499) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.3.3 to 3.4.0 (#498) @dependabot[bot]
• build(deps): bump virtualenv from 20.27.1 to 20.28.0 in /.github/workflows (#494) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.21.3 to 2.22.0 (#490) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.21.3 to 2.22.0 (#491) @dependabot[bot]
• build(deps-dev): bump ruff from 0.7.4 to 0.8.0 (#492) @dependabot[bot]
• build(deps): bump mashumaro from 3.14 to 3.15 (#493) @dependabot[bot]
• build(deps): bump setuptools from 75.5.0 to 75.6.0 (#489) @dependabot[bot]
• build(deps): bump typer from 0.13.0 to 0.13.1 (#488) @dependabot[bot]
• build(deps-dev): bump ruff from 0.7.3 to 0.7.4 (#486) @dependabot[bot]
• build(deps): bump deprecated from 1.2.14 to 1.2.15 (#487) @dependabot[bot]
• build(deps): bump setuptools from 75.4.0 to 75.5.0 (#484) @dependabot[bot]
• build(deps): bump codecov/codecov-action from 4 to 5 (#485) @dependabot[bot]
• build(deps): bump setuptools from 75.3.0 to 75.4.0 (#483) @dependabot[bot]
• build(deps-dev): bump ruff from 0.7.2 to 0.7.3 (#482) @dependabot[bot]
• build(deps): bump typer from 0.12.5 to 0.13.0 (#481) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.12.0 to 1.12.2 (#480) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.11.0 to 1.12.0 (#479) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.10.3 to 1.11.0 (#473) @dependabot[bot]
• build(deps): bump setuptools from 75.2.0 to 75.3.0 (#474) @dependabot[bot]
• build(deps-dev): bump ruff from 0.7.1 to 0.7.2 (#476) @dependabot[bot]
• build(deps): bump rich from 13.9.3 to 13.9.4 (#477) @dependabot[bot]
• build(deps-dev): bump py-spy from 0.3.14 to 0.4.0 (#478) @dependabot[bot]
• build(deps): bump virtualenv from 20.26.6 to 20.27.1 in /.github/workflows (#475) @dependabot[bot]
• build(deps): bump poetry from 1.8.3 to 1.8.4 in /.github/workflows (#459) @dependabot[bot]
• build(deps): bump virtualenv from 20.27.0 to 20.27.1 in /.github/workflows (#472) @dependabot[bot]
• build(deps): bump crazy-max/ghaction-github-labeler from 5.0.0 to 5.1.0 (#469) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.3.2 to 3.3.3 (#470) @dependabot[bot]
• build(deps): bump pip from 24.2 to 24.3.1 in /.github/workflows (#471) @dependabot[bot]
• build(deps): bump mashumaro from 3.13.1 to 3.14 (#466) @dependabot[bot]
• build(deps): bump rich from 13.9.2 to 13.9.3 (#467) @dependabot[bot]
• build(deps-dev): bump ruff from 0.7.0 to 0.7.1 (#468) @dependabot[bot]
• build(deps): bump nox from 2024.4.15 to 2024.10.9 in /.github/workflows (#457) @dependabot[bot]
• build(deps-dev): bump nox from 2024.4.15 to 2024.10.9 (#456) @dependabot[bot]
• build(deps): bump setuptools from 75.1.0 to 75.2.0 (#460) @dependabot[bot]
• build(deps): bump virtualenv from 20.26.6 to 20.27.0 in /.github/workflows (#461) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.9 to 0.7.0 (#462) @dependabot[bot]
• build(deps-dev): bump psutil from 6.0.0 to 6.1.0 (#463) @dependabot[bot]
• build(deps-dev): bump mypy from 1.11.2 to 1.13.0 (#465) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.8 to 0.6.9 (#452) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.21.2 to 2.21.3 (#453) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.21.2 to 2.21.3 (#454) @dependabot[bot]
• build(deps): bump rich from 13.9.1 to 13.9.2 (#451) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 (#450) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.21.1 to 2.21.2 (#447) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.20.0 to 2.21.2 (#448) @dependabot[bot]
• build(deps-dev): bump sphinx-autobuild from 2024.9.19 to 2024.10.3 (#449) @dependabot[bot]
• build(deps): bump rich from 13.8.1 to 13.9.1 (#446) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.7 to 0.6.8 (#444) @dependabot[bot]
• build(deps): bump virtualenv from 20.26.5 to 20.26.6 in /.github/workflows (#445) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.6 to 0.6.7 (#441) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 (#442) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.3.1 to 3.3.2 (#443) @dependabot[bot]
• build(deps-dev): bump sphinx-autobuild from 2024.9.17 to 2024.9.19 (#439) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.5 to 0.6.6 (#440) @dependabot[bot]
• build(deps-dev): bump sphinx-autobuild from 2024.9.3 to 2024.9.17 (#437) @dependabot[bot]
• build(deps): bump virtualenv from 20.26.4 to 20.26.5 in /.github/workflows (#438) @dependabot[bot]
• build(deps): bump pybind11 from 2.13.5 to 2.13.6 (#432) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.4 to 0.6.5 (#430) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.20.0 to 2.21.1 (#434) @dependabot[bot]
• build(deps): bump setuptools from 74.1.2 to 75.1.0 (#436) @dependabot[bot]
• build(deps-dev): bump pytest from 8.3.2 to 8.3.3 (#425) @dependabot[bot]
• build(deps): bump rich from 13.8.0 to 13.8.1 (#426) @dependabot[bot]
• build(deps): bump sphinxcontrib-bibtex from 2.6.2 to 2.6.3 (#427) @dependabot[bot]
• build(deps): bump urllib3 from 2.2.2 to 2.2.3 (#428) @dependabot[bot]
• build(deps): bump virtualenv from 20.26.3 to 20.26.4 in /.github/workflows (#424) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.3 to 0.6.4 (#423) @dependabot[bot]
• build(deps-dev): bump sphinx-autobuild from 2024.4.16 to 2024.9.3 (#418) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 (#420) @dependabot[bot]
• build(deps): bump setuptools from 74.0.0 to 74.1.2 (#422) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.3.0 to 3.3.1 (#416) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0 (#417) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.2 to 0.6.3 (#414) @dependabot[bot]
• build(deps-dev): bump delocate from 0.11.0 to 0.12.0 (#415) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.2.1 to 3.3.0 (#413) @dependabot[bot]
• build(deps): bump typer from 0.12.4 to 0.12.5 (#409) @dependabot[bot]
• build(deps-dev): bump mypy from 1.11.1 to 1.11.2 (#410) @dependabot[bot]
• build(deps): bump rich from 13.7.1 to 13.8.0 (#411) @dependabot[bot]
• build(deps): bump setuptools from 73.0.1 to 74.0.0 (#412) @dependabot[bot]
• build(deps): bump pybind11 from 2.13.4 to 2.13.5 (#407) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.1 to 0.6.2 (#408) @dependabot[bot]
• build(deps): bump setuptools from 72.2.0 to 73.0.1 (#406) @dependabot[bot]
• build(deps): bump typer from 0.12.3 to 0.12.4 (#403) @dependabot[bot]
• build(deps-dev): bump ruff from 0.6.0 to 0.6.1 (#404) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.7 to 0.6.0 (#402) @dependabot[bot]
• build(deps): bump pybind11 from 2.13.3 to 2.13.4 (#401) @dependabot[bot]
• build(deps): bump pybind11 from 2.13.1 to 2.13.3 (#399) @dependabot[bot]
• build(deps): bump setuptools from 72.1.0 to 72.2.0 (#400) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.6 to 0.5.7 (#398) @dependabot[bot]
• build(deps): bump myst-parser from 3.0.1 to 4.0.0 in /docs (#397) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.5 to 0.5.6 (#394) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.19.2 to 2.20.0 (#395) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.19.2 to 2.20.0 (#396) @dependabot[bot]
• build(deps-dev): bump mypy from 1.11.0 to 1.11.1 (#393) @dependabot[bot]
• build(deps): bump setuptools from 72.0.0 to 72.1.0 (#392) @dependabot[bot]
• build(deps): bump pip from 24.1.2 to 24.2 in /.github/workflows (#389) @dependabot[bot]
• build(deps): bump setuptools from 71.1.0 to 72.0.0 (#390) @dependabot[bot]
• build(deps-dev): bump pytest from 8.3.1 to 8.3.2 (#391) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.4 to 0.5.5 (#388) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.2.0 to 3.2.1 (#387) @dependabot[bot]
• build(deps-dev): bump mypy from 1.10.1 to 1.11.0 (#386) @dependabot[bot]
• build(deps): bump sphinx from 7.4.6 to 7.4.7 (#381) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.3 to 0.5.4 (#382) @dependabot[bot]
• build(deps-dev): bump pytest from 8.2.2 to 8.3.1 (#383) @dependabot[bot]
• build(deps): bump setuptools from 71.0.3 to 71.1.0 (#384) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.1.2 to 3.2.0 (#385) @dependabot[bot]
• build(deps): bump setuptools from 71.0.1 to 71.0.3 (#378) @dependabot[bot]
• build(deps): bump sphinx from 7.4.5 to 7.4.6 (#379) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.2 to 0.5.3 (#380) @dependabot[bot]
• build(deps): bump setuptools from 70.3.0 to 71.0.1 (#377) @dependabot[bot]
• build(deps): bump sphinx from 7.4.4 to 7.4.5 (#376) @dependabot[bot]
• build(deps): bump sphinx from 7.4.0 to 7.4.4 (#375) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.1 to 0.5.2 (#373) @dependabot[bot]
• build(deps): bump sphinx from 7.3.7 to 7.4.0 (#374) @dependabot[bot]
• build(deps): bump setuptools from 70.2.0 to 70.3.0 (#372) @dependabot[bot]
• build(deps): bump pip from 24.1.1 to 24.1.2 in /.github/workflows (#370) @dependabot[bot]
• build(deps-dev): bump ruff from 0.5.0 to 0.5.1 (#371) @dependabot[bot]
• build(deps-dev): bump sphinx-immaterial from 0.11.13 to 0.11.14 (#369) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.19.1 to 2.19.2 (#367) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.19.1 to 2.19.2 (#368) @dependabot[bot]
• build(deps): bump setuptools from 70.1.1 to 70.2.0 (#365) @dependabot[bot]
• build(deps-dev): bump sphinx-immaterial from 0.11.12 to 0.11.13 (#366) @dependabot[bot]
• build(deps): bump pybind11 from 2.13.0 to 2.13.1 (#362) @dependabot[bot]
• build(deps-dev): bump ruff from 0.4.10 to 0.5.0 (#363) @dependabot[bot]
• build(deps): bump biopython from 1.83 to 1.84 (#364) @dependabot[bot]
• build(deps): bump pip from 24.1 to 24.1.1 in /.github/workflows (#361) @dependabot[bot]
• build(deps-dev): bump mypy from 1.10.0 to 1.10.1 (#358) @dependabot[bot]
• build(deps): bump pybind11 from 2.12.0 to 2.13.0 (#359) @dependabot[bot]
• build(deps): bump setuptools from 70.1.0 to 70.1.1 (#360) @dependabot[bot]
• build(deps): bump virtualenv from 20.26.2 to 20.26.3 in /.github/workflows (#357) @dependabot[bot]
• build(deps): bump setuptools from 70.0.0 to 70.1.0 (#353) @dependabot[bot]
• build(deps-dev): bump ruff from 0.4.9 to 0.4.10 (#355) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.1.1 to 3.1.2 (#356) @dependabot[bot]
• build(deps): bump pip from 24.0 to 24.1 in /.github/workflows (#354) @dependabot[bot]
• build(deps-dev): bump psutil from 5.9.8 to 6.0.0 (#352) @dependabot[bot]
• build(deps): bump urllib3 from 2.2.1 to 2.2.2 (#351) @dependabot[bot]
• build(deps): bump mashumaro from 3.13 to 3.13.1 (#349) @dependabot[bot]
• build(deps): bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 (#350) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.19.0 to 2.19.1 (#345) @dependabot[bot]
• build(deps-dev): bump sphinx-immaterial from 0.11.11 to 0.11.12 (#346) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.19.0 to 2.19.1 (#347) @dependabot[bot]
• build(deps-dev): bump pytest from 8.2.1 to 8.2.2 (#341) @dependabot[bot]
• build(deps-dev): bump ruff from 0.4.6 to 0.4.8 (#342) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.18.1 to 2.19.0 (#343) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.18.1 to 2.19.0 (#344) @dependabot[bot]
• build(deps-dev): bump ruff from 0.4.5 to 0.4.6 (#339) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.1.0 to 3.1.1 (#337) @dependabot[bot]
• build(deps-dev): bump ruff from 0.4.4 to 0.4.5 (#338) @dependabot[bot]
• build(deps): bump setuptools from 69.5.1 to 70.0.0 (#336) @dependabot[bot]
• build(deps-dev): bump cibuildwheel from 2.18.0 to 2.18.1 (#333) @dependabot[bot]
• build(deps-dev): bump sphinx-autoapi from 3.0.0 to 3.1.0 (#334) @dependabot[bot]
• build(deps): bump pypa/cibuildwheel from 2.17.0 to 2.18.1 (#335) @dependabot[bot]
• build(deps-dev): bump pytest from 8.2.0 to 8.2.1 (#332) @dependabot[bot]
• build(deps): bump sphinx-click from 5.2.2 to 6.0.0 in /docs (#330) @dependabot[bot]
• build(deps): bump sphinx-click from 5.2.1 to 6.0.0 (#331) @dependabot[bot]