R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

A tool for semi-automatic cell type classification

A small package to create visualizations of PyTorch execution graphs

Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data

An open and interoperable data framework for spatial omics data

SPAtial GrapHs: nETworks, Topology, & Inference

PySAL: Python Spatial Analysis Library Meta-Package

A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping

The formal version of scDesign3 package

Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings

Seurat meets tidyverse. The best of both worlds.

Web application to collect and visualise data across multiple MultiQC runs.

A minimap2 frontend for PacBio native data formats

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

stitcher.py reconstructs molecules from Smart-seq3 data.

Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"

Data visualisation web components for the life sciences.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Draw pretty maps from OpenStreetMap data! Built with osmnx +matplotlib + shapely

NOOBS (New Out Of Box Software) - An easy Operating System install manager for the Raspberry Pi

Free, open source crypto trading bot

Graph Data Augmentation Library for PyTorch Geometric

Python interface to Graphviz's Dot language

SUPPA: Fast quantification of splicing and differential splicing

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

Latex code for making neural networks diagrams

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.